Nucleic acid « Chiroblog

Archive pour la catégorie ‘Acides nucléiques

Evolutionary convergence (4) : molecules into !

Saturday 27 April 2013

A fourth episode adds to this series dedicated to evolutionary convergences. In previous episodes, we have seen that convergence is parallel acquisitions of similar structures in different lineages but subject to equivalent environmental conditions. We have seen examples of convergence ecomorphological (ecology + morphology) as in bats fisherwomen, the Myotis and in nectar bats of the family Phyllostomidae. Even more impressive, convergence may exist molecular level ! This was discovered American and Chinese researchers in Cetaceans (specifically in toothed whales or Odontoceti) and Microchiroptera *, that use ultrasound the mechanismecholocation (= biosonar) to lead and drive. The gene encoding the prestine, protein used to hearing and sound amplification, in these animals shows a very similar molecular mechanism (He et al. 2008 & 2010, Jones 2010, Liu et al. 2010).

So, Examples of convergence are increasing in the literature and further work in this area still promises many discoveries equally interesting about the evolution of life.

Yann for Chiroblog

Microchiroptera * : Two sub-orders were conventionally accepted : the Microchiroptera (small relative size and capable of echolocation) and Megachiroptera (large relative ; Dobson 1875). Recently, the order was recut into two new sub-orders to break the paraphyletic Microchiroptera : the Yinpterochiroptera and Yangochiroptera (Teeling et al. 2002 ; Teeling et al. 2005).

References :

Jones, G. (2010). Molecular evolution: gene convergence in echolocating mammals. Current biology : CB, 20(2), R62–4. two:10.1016/j.cub.2009.11.059

Li, G., Wang, J., Rossiter, S. J., Jones, G., Cotton, J. A., & Zhang, S. (2008). The hearing gene Prestin reunites echolocating bats. Proceedings of the National Academy of Sciences of the United States of America, 105(37), 13959–64. two:10.1073/pnas.0802097105

Li, Y., Liu, Z., Shi, P., & Zhang, J. (2010). The hearing gene Prestin unites echolocating bats and whales. Current biology : CB, 20(2), R55–6. two:10.1016/j.cub.2009.11.042

Liu, Y., Cotton, J. A., Shen, B., Han, X., Rossiter, S. J., & Zhang, S. (2010). Convergent sequence evolution between echolocating bats and dolphins. Current biology : CB, 20(2), R53–4. two:10.1016/j.cub.2009.11.058

Teeling, It. C., The. Madsen, R. A. Van den Bussche, W. In. de Jong, M. J. Stanhope a M. S. Springer. 2002. Microbat paraphyly and the convergent evolution of a key innovation in Old World rhinolophoid microbats. Proceedings of the National Academy of Sciences, USA 99: 1431-1436.

Teeling, It. C., M. S. Springer, The. Madsen, P. Bates, J. O'Brien S et W. J. MurJhy. 2005. A molecular phylogeny for bats illuminates biogeography and the fossil record. Science 307: 580-584.

News in October 2012

Friday 5 October 2012

A new selection of scientific articles for the month of October 2012 :

- An article that solves a mystery of 65 years during which we knew only a single copy of Paracoelops megalotis, a small bat in the collected in the Hipposiderids family 1947 to the Viet Nam. Person since had never managed to capture another copy of the species that represents a unique kind. A re-examination of the specimen type Paracoelops megalotisdéceller has significant errors in the description and comparison with bats captured recently in Vietnam led to the conclusion that the case was none other than Hipposideros pomona, a species relatively frequent in Southeast Asia [download the PDF].

- A new phylogeny of the Murine (Myotis) Central America and tropical was published in the journal PLoS One
[download the PDF]. On the basis of molecular criteria, three new lines nt been described, It will add to the 15 already known.

- A publication published in the Canadian Journal of Zoology highlights possible hybridization
between species Pipistrellus pipistrellus and P. pygmaeus [link to the summary].

- An article that highlights the learning of specific groups in the Emballonuridae acoustic signals Saccopteryx bilineata, useful for recognition between individuals [link to the summary]

The team Chiroblog

References


- Thong V.D., Dietz C., Denzinger A., Bates P.J.J., Puechmaille S.J., Christian C. Schnitzler and H-U. (2012). Resolving a mystery mammal: the identity of Paracoelops megalotis (Chiroptera: Hipposideridae). Zootaxa, 3505, 75-85.

- Knornschild, M., Large, M., Metz,M.., Mayer, F., & von Helversen, The. (2012). Learned vocal group signatures in the polygynous beats Saccopteryx bilineata. Animal Behaviour, 84(4), 761-769. two:10.1016/j.anbehav.2012.06.029

- Larsen RJ, Knapp MC, Genoways HH, Khan FAA, Larsen PA, et al. (2012) Genetic Diversity of Neotropical Myotis (Chiroptera: Vespertilionidae) with an Emphasis on South American Species. PLoS ONE 7(10): e46578. two:10.1371/journal.pone.0046578

- Sztencel-Jabłonka, A., & Bogdanowicz, In. (2012). Population genetics study of common (Pipistrellus pipistrellus ) and soprano (Pipistrellus pygmaeus) pipistrelle bats from central Europe suggests interspecific hybridization. Canadian Journal of Zoology, 90(10), 1251–1260. two:10.1139/z2012-092

News in May 2012

Tuesday 15 May 2012

A new selection of scientific articles for the month of May 2012 :

- An article published in PloS One which develops the use of DNA minibarcodes
to detect the diet of mountain murine Plecotus macrobullaris [link to the abstract and PDF].

- A new classification of the family Emballonuridae Old World
published in Molecular Phylogenetics and Evolution [link to the summary].

- A new species of Gender Hipposideros just been described and its name, Hipposideros griffini rend homage au Professeur Donald Redfield Griffin (1915–2003) which initiated extensive research on echolocation in bats [link to the summary].

-Group classification 'turpis’ in Hipposideros just be reviewed with the key two subspecies elevated to full species and one new subspecies described [link to PDF].

- An article published in Nature communications describing the wide variety ofParamyxoviridaein bats (and rodents) [download communication]. Like other viral families (lesCoronaviridae for example) the Paramyxoviridae, comprising the genera Henipavirus (Virus Nipah and Hendra), but alsoRubulavirus (mumps virus: “mumps”) etMorbillivirus (measles virus, and fever virus-of-small-ruminant) have diversified in multiple groups of mammals and especially in large groups such as rodents and bats. We'll go into more detail on this article in a future post.

Otherwise, we remind you 3th international meetings bats Berlin and the Bat Distribution Viewerwhich allows to view distribution maps of bat species worldwide.

The team Chiroblog

References

- Alberdi, A., Garin, I., Aizpurua, O., & Aihartza, J. (2012). The Foraging Ecology of the Mountain Long-Eared Bat Plecotus macrobullaris Revealed with DNA Mini-Barcodes. PLoS ONE, 7(4), e35692.

- Ruedi, M., Friedli-Weyeneth, N., Teeling, It. C., Puechmaille, S. J., & Goodman, S. M. (2012). Biogeography of Old World emballonurine bats (Chiroptera: Emballonuridae) inferred with mitochondrial and nuclear DNA. Molecular phylogenetics and evolution, 64(1), 211-204. two:10.1016/j.ympev.2012.03.019

- Thong, V.D., Puechmaille S.J., Denzinger A., Csorba G., Dietz C., Bates P.J.J., Teeling E.C. Schnitzler and H-U. (2012). A new species of Hipposideros (Chiroptera: Hipposideridae) from Vietnam. Journal of Mammalogy, 93(1), 1-11.

-Thong, V.D., Puechmaille S.J., Denzinger A., Bates P.J.J., Dietz C., Csorba G., Soisook P., Teeling E.C., Matsumura S., Furey N. Schnitzler and H-U. (2012). Systematics of the Hipposideros turpis complex with a description of a new subspecies from Vietnam. Mammal Review, 42(2), 166-192.

- Drexler, J. F., Corman, In. M., Miller, M. A., Maganga, G. D., Vallo, P., Binger, T., Gloza noise, FF. et al. (2012). Bats host major mammalian paramyxoviruses. Nature Communications, 3, 796.

News in March 2012

Monday 19 March 2012

A new selection of scientific articles for the month of March 2012 :

- A new classification of the subfamily Molossinae (Molossidae) comprising analysis
Molecular Character, has just been published in the Journal of Mammalogy [download the PDF].

- A new phylogeny of the Murine (Myotis) Caribbean was published in the journal Mammalian Biology
[link to the summary]. Based on morphological and molecular, a third species endemic to the Caribbean was discovered.

- An article published in PLoS One reports on the use of chemicals, les isotopes stables,
as a method to predict the breeding site of European bats
[link to the abstract and PDF].

The team Chiroblog

References

- Ammerman, The. K., Lee, D. N., & Tips, T. M. (2012). First molecular phylogenetic insights into the evolution of free-tailed bats in the subfamily Molossinae (Molossidae, Chiroptera). Journal of Mammalogy, 93(1), 12-28. two:10.1644/11-MAMM-A-103.1

- Larsen, R. J., Larsen, P. A., Genoways, H. H., Catzeflis, F. M., Geluso, K., Kwiecinski, G. G., Pedersen, S. C., et al. (2012). Evolutionary history of Caribbean species of Myotis, with evidence of a third Lesser Antillean endemic. Mammalian Biology – Journal of Mammalogy, 77(2), 124-134. two:10.1016/j.mambio.2011.11.003

- Popa-Lisseanu, A. G., Soergel, K., Luckner, A., Wassenaar, The. I., Ibanez, C., Kramer-Schadt, S., Ciechanowski, M., et al. (2012). A triple-isotope approach to predict the breeding origins of European bats. PloS ONE, 7(1), e30388. two:10.1371/journal.pone.0030388

The main news in fortnightly.

Wednesday 7 December 2011

We hope to issue a summary of the news of bats in the world every two weeks.

The good news, lesPhoto contest results for the year of the bat are online. Congratulations to all winners ! More, We have put together a small selection of items:

- Nature in a paper confirming the link between the fungus Geomyces destructans and White Nose Syndrome (“White Nose Syndrome”) [link to the English summary].

- a paper in Nature Communications studying speciation in the smallest mammal in the world, the bumblebee bat (cf. detailed article yesterday about this paper on Chiroblog), [download the PDF],

- a paper on the Natterer of Murine(Myotis nattereri), a complex that would include 4 species in the Western Palearctic ! [link to the English summary]

- a second paper on the species complex of the Murine Natterer which shows the distribution of these new species discovered in France and the possible presence of a species new to science in Corsica [download the PDF],

- a paper on the effect of a highway on the activity and diversity of Chiros [link to the English summary].

That's all for today, soon for a new item on the news of bats !

For the team Chiroblog,

Yann, Meriadeg & Seb

PS : For users of Twitter, RDV sur @ bat_yann, @ @ Henlakebats and SmileyBat chiropractors for more info !

On the Origin of Species : the smallest mammal in the world, the bumblebee bat unravels the mechanisms of speciation

Tuesday 6 December 2011

A major challenge in biology is to understand how species evolve. Today, about 150 years after the publication of Darwin “On the Origin of Species” we really still do not understand the process of speciation. This is partly due to the fact that most classical studies of speciation are based on species that have diverged, and therefore, we speculate back in time to infer the causes of speciation. A effet, two of the best known examples of “sympatric speciation”, cichlids of Lake Victoria and horseshoe bats of Wallace, suggest that the sensory ecology (how an animal perceives and interacts with its environment) plays a major role in the speciation process, that the populations are geographically isolated or not. However, in these studies, researchers were unable to study the factors involved in the early stages of the process of speciation.

Bumblebee bats, smallest mammal in the world; photo taken in Burma 2006 by the field team.

«Our study is unique in the sense that it captures the speciation “in action” in populations that are currently diverge ecologically. These populations are those of the smallest mammal in the world, the bumblebee bat (Craseonycteris thonglongyai) found only in Thailand and Burma. These people represent a unique natural experiment that allows “capture” the evolutionary process has a time scale for identifying the nature of these processes that result in nature speciation” says Dr Emma Teeling who led the research team during this study.

By studying the process of early speciation at different evolutionary time scales, this study shows that in the case of this species, a limited gene flow, resulting from the geographical distance, is needed to promote ecological speciation sensory.

To do, we examined the spatial structure, genetic structure and ecological traits between sensory and within only two known populations of the smallest mammal in the world, the bumblebee bat (Craseonycteris thonglongyai). We generated and collected a large set of molecular data, Ecological and acoustic show that geographic distance plays a key role in limiting gene flow rather than the divergence of echolocation. Our results support the idea that sensory ecology acts as a strengthening mechanism in the speciation process rather than being the main driver as was previously assumed in other well-documented empirical. Our results raise the question of whether sympatric speciation actually occurs, or if some level of geographic isolation and thus restricted gene flow is still required to initiate the process of speciation », said Dr. Sebastien Puechmaille, lead author of the study.

Another interesting finding of this study is the identification of a gene “echolocation” (RBP-J) showing signs of divergent selection corresponding to the divergence of echolocation in this Thai population. This is the first association of this gene identified with capacities of echolocation. This gene is involved in the formation of hair cells in the cochlea (receptor organ sounds in the inner ear). As bats use the highest frequencies (above 200 kHz) of all mammals, their auditory system, especially the hair cells in the organ of Corti, where the sound is received and amplified, needs special adaptations.

«We also show that interspecific competition with another species of bat, Myotis siligorensis, is probably the cause of localization sensory, as opposed to random drift or abiotic factors such as temperature and humidity», said Dr. Sebastien Puechmaille.

From the standpoint of conservation, this is the first study to investigate the population structure and evolutionary history of the world's smallest mammal, the bumblebee bat, Craseonycteris thonglongyai. “This species of bat is rare and endangered charismatic, limited to a region of 2000 km2 in the border area between Thailand and Burma and is considered one of the ten species evolutionarily distinct and globally endangered (Evolutionary Distinct and Globally Endangered, EDGE, species)“, said Dr. Emma Teeling.

Phylogenetic analyzes of markers transmitted through the maternal line, paternal, or inherited by both parents and ecological data demonstrate the presence of two species of bumblebee bat, one in Thailand and Burma, which are separated there are about 0,4 million years. Limited dispersal abilities of individuals combined with a very limited range (less 2000 km2) suggest that both species are threatened and require management plans and conservation distinct.

This paper is published 6 December 2011 so is available free in the journal Nature Communications (http://www.nature.com/ncomms/journal/v2/n12/pdf/ncomms1582.pdf). The reference of this paper is :

Puechmaille, S.J., Ar Gouilh, M., Piyapan, P., Yokubol, M., Khin Mie Mie, Bates, P.J.J., Satasook, C., Tin Nwe, Si Si Hla Bu, Mackie, I.J., Small E.J., and Teeling E.C.  (2011). The evolution of sensory divergence in the context of limited gene flow in the bumblebee bat. Nature Communications 2, 573, DOI: 10.1038/ncomms1582.  [The evolution of sensory discrepancy in the context of limited gene flow in the bumblebee bat].

This work represents an Irish project, IFC-financed, an Irish Foundation for Science and awarded to Dr.. Emma Teeling. This project was a collaboration between researchers in France, Thailand, and Birmanie, UK and Ireland to address a fundamental question in biology with implications for conservation.

Seb.

A new family of bats : I Cistugidae !

Thursday 10 March 2011

Echoing our last article “A classification in perpetual motion” We report here the creation of a new family of bats proposed by American and Swiss scientists: the Cistugidae of the suborder Yangochiroptera. Two species of South Africa, Cistugo seabrae and Cistugo lesueuri, are concerned. They were previously classified in the family Vespertilionidae, at the sub-genre in the genre then Cistugo Myotis.A study published in 2010 proposes the definition of the new family of Cistugidae to classify such Cistugo. The molecular dating performed on the data of Lack et al. (2010) on the mitochondrial and nuclear DNA has a date of onset of this family back to about 34 million years. According to this same study, the origin of the Cistugidae precede the actual next of kin, lesVespertilionidae which would have arisen there 27 million years. Door to this new family 20 the number of families of bats, 6 in the suborder Yinpterochiroptera and 14 in the suborder Yangochiroptera.

A press release is available at the Geneva Museum where works Manuel Ruedi, one of the coauthors of the article proposing this new family.

la chauve-souris de Seabra (Cistugo seabrai), une des deux seules espèces appartenant à la nouvelle famille des Cistugidés. ©Muséum de Genève; photo: Manuel Ruedi

The bat Seabra (Cistugo seabrai), one of only two species belonging to the new family of Cistugidés. © Museum of Geneva; photo: Manuel Ruedi

Yann & Meriadeg

Citation

Lack, J. B., The. P. Roehrs, C. It. Stanley, M. Ruedi, and R. A. Van den Bussche. 2010. Molecular phylogenetics of Myotis indicate familial-level divergence for the genus Cistugo (Chiroptera). Journal of Mammalogy 91:976-992.

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Tuesday 11 November 2008

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Conservation in RNA

Sunday 3 August 2008

I heard it was better to keep the samples in RNAlater -20 or -80 ° C to avoid degradation of RNA rather than at room temperature. What is the best technique ?